miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|83927894|gb|AM097008.1|AM097008 GTTTTATTTCTTGAGNAATTACAATTTTAATTCGCTGAAAAGACCTTTTGGACGCATGATATCAATTCTACGGTGTAGGT
GAAGTATCTGCAGCAAGGAGTTGTTTAGTAAATTTAGAGAGAAAAATCGCGTGATTGGTTCTTTTTTCCCAACATCTTCG
AGATGGATGATGTTATTAGTGATCAGGATAAGGTGAGGATTGCATCGGATTTTATTCTTCACGCACCACCAGGTGAATTC
AATGAGGTATTCAACGATGTCCGGGAGCTCCTTAAGAATGATGCACTTCTTAAGGAAGGTGCTTCAGCTGCATTTGCCCA
ATACAACAAAGATCAATTGACACCCGTGAGACTGGAGAACGCCGATCATTCAGGACTCATAACAGAATTCAATGATCTCG
GTGGTGGGCGTTTCTTTGATCAACGCTCAAAGCAGTCCTTTAAGTATGATCACCTGAGGAAAGAGGCTTCGGACTATCAG
GCCTACGAGTCAGATAGTGTTTCGGAACCATGGCGAAGTGCTTTGGATACTGAGGCTCTCATTTATACGGCAACACACTA
CCGGCATGGGATATGTGCTGTCTTCAGTCGCAGTCAAGGGGGGCAAGTGACAATGACGCTATGCATCGAGGATCATCAGT
TCCAACCGAAAAACTACTGCAATGGCCGATGGCGCTCACAGTGGACGGTAACCTTTGCACCGGGAACGGGAAGTGCTGTA
GCCGAACTCAAGGGTATCCTTAAGGTGCAAGTGCACTACTACGAGGATGGGAATGTACAACTTGTATCATCCAAGGAATG
CCGTGAGTCGGTCATTGCTACAAATCCCGTGGCAAACGCTAAAGAGATTTGTCGACTTATTGAGGGAGCGGGAAAATGAC
TACCAAACCTGCCATCTCGGAAAACTACCAGACTATGTCTTGATACAACATTCAAGGCGCTCCAGCGGCCACTTCCGGTT
ACACGGACCAAGATTGATTGGTCCAAAGATTATTTCCATCGAATTGGAAAAAAACTTTCACCAATAATCTTATTGGATTA
CATTTTTTACCTTCCATTGGCATTCCTTTTTTTTTTGGGCCCAAAATAAAGAACACCCCTTTTTAAGGGGGTCCGCCCTT
ACCCCAAAAGAAGAAGAAAAAAACCCATTTATGCTCTCCTAAAATCTCTTGGGAAAATTTTAAATGGGTTATTAAAAAAA
AAAAACCCCTCCCCCCATTCTCCTTTCTCCGTGTATATTTTTGGTAGACATTATGAATGTAAATAAGATACTGACTCTTT
TCACAACACACTAATGAGNAATAAAATTTGTTGTAAAAAACTCCTACTAAAGAGTTAAAACAAATCTGC




Most similar to sp|Q9W2N0|CAPZA_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LVC9|RLA32_ARATH 60S acidic ribosomal protein P3-2
           OS=Arabidopsis thaliana GN=RPP3B PE=1 SV=1
          Length = 120

 Score = 79.3 bits (194), Expect(2) = 2e-26
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = +2

Query: 59  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRXL 172
           MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQR L
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38



 Score = 60.1 bits (144), Expect(2) = 2e-26
 Identities = 39/82 (47%), Positives = 39/82 (47%)
 Frame = +1

Query: 172 VQTALSADSSGGVQSSFSLVSPTSAVFVVVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 351
           VQTALSADSSGGVQSSFSLVSPTSAVFVVVI                             
Sbjct: 39  VQTALSADSSGGVQSSFSLVSPTSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATK 98

Query: 352 XXXXXXXXXXXXXXDFGFDLFG 417
                         DFGFDLFG
Sbjct: 99  EEEKKKEESEEEEGDFGFDLFG 120


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9W2N0|CAPZA_DROME F-actin-capping protein subunit alpha
            OS=Drosophila melanogaster GN=cpa PE=1 SV=1
          Length = 286

 Score =  401 bits (1030), Expect = e-111
 Identities = 195/281 (69%), Positives = 230/281 (81%)
 Frame = +1

Query: 175  ISDQDKVRIASDFILHAPPGEFNEVFNDVRELLKNDALLKEGASAAFAQYNKDQLTPVRL 354
            I+D +KVRI SDFILHAPPGEFNEVFNDVRELLKND LLK+GAS AFAQYNKDQLTPVR+
Sbjct: 6    ITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASHAFAQYNKDQLTPVRI 65

Query: 355  ENADHSGLITEFNDLGGGRFFDQRSKQSFKYDHLRKEASDYQAYESDSVSEPWRSALDTE 534
            E  DH+ +I+E NDLG GRF+D R+KQ+FKYDHLRKEASDYQ  E+D+ +EPWR+ALD E
Sbjct: 66   EGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASDYQDVEADATAEPWRAALDLE 125

Query: 535  ALIYTATHYRHGICAVFSRSQGGQVTMTLCIEDHQFQPKNYCNGRWRSQWTVTFAPGTGS 714
             L YTA+HYRHG+ +VF ++QG Q+T+T+CIEDHQFQPKNY NGRWRSQW VTF  G+G+
Sbjct: 126  TLAYTASHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGT 185

Query: 715  AVAELKGILKVQVHYYEDGNVQLVSSKECRESVIATNPVANAKEICRLIEGAGK*LPNLP 894
              AELKG+LKVQVHYYEDGNVQLVSSKECRESV+ +N    AKE+ RLIE A      L 
Sbjct: 186  --AELKGVLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEY-QLA 242

Query: 895  SRKTTRLCLDTTFKALQRPLPVTRTKIDWSKDYFHRIGKKL 1017
              +  +   DTTFKA++R LP+TRTKIDWSK   + IGK+L
Sbjct: 243  ISENYQTMSDTTFKAMRRQLPITRTKIDWSKIVSYSIGKEL 283